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When a public repository contains credentials that match known secret formats, GitHub will automatically notify the service provider that issued the secret. This process is known as 'secret scanning partner notification'. The provider may then revoke the secret or contact the user directly.

GitHub does not publicly display the alert and does not send internal repository notifications for public detections.

To ensure you're notified whenever a vulnerability is detected via Dependabot, you must enable alerts for Dependabot in your personal notification settings. This applies to both new and existing repositories. It ensures you get timely alerts about security vulnerabilities.

The dependency graph must be enabled for scanning, but does not send alerts itself.

In a query suite (a .qls file), the **query** key is used to specify the paths to one or more .ql files that should be included in the suite.

Example:

- query: path/to/query.ql

qls is the file format.

qlpack is used for packaging queries, not in suite syntax.

Comprehensive and Detailed Explanation:

A CodeQL database contains a representation of your codebase, including the build of the code and extracted data. This database is used to run CodeQL queries to analyze your code for potential vulnerabilities and errors.

GitHub Docs

Secrets committed and then deleted are still accessible in the repository's Git history. To locate them, navigate to the Commits tab. GitHub's secret scanning can detect secrets in both current and historical commits, which is why remediation should also include revoking the secret, not just removing it from the latest code.

If an alert is raised on a pull request dependency, best practice is to update the dependency to a secure version before merging the PR. This prevents the vulnerable version from entering the main codebase.

Merging or deploying the PR without fixing the issue exposes your production environment to known risks.

A Dependabot alert is marked as resolved only after the related pull request is merged into the repository. This indicates that the vulnerable dependency has been officially replaced with a secure version in the active codebase.

Simply generating a PR or passing checks does not change the alert status; merging is the key step.